Recently added Publications

SL, M, MA K, L H, VF O, J W, J Q, DJ Z. 2012. Cell-specific DNA methylation patterns of retina-specific genes.. PLoS One: 7(3):e32602
VF, O, HL M, WS C, PL H, JL L, IM M. 2012. Defects in imprinting and genome-wide DNA methylation are not common in the in vitro fertilization population. Fertility and Sterility: 97:147-53
Wotton, DM, Kelly D. 2011. Frugivore loss limits recruitment of large-seeded trees.. Proceedings of the Royal Society Series B: Biological Sciences. 278: 3345–3354
Kunz, A-PE, Allison JR, Geerke DP, Horta BAC, Hünenberger PH, Riniker S, Schmid N, van Gunsteren WF. 2012. New functionalities in the GROMOS biomolecular simulation software. Journal of Computational Chemistry. 33: 340-353
Allison, JR, Bergeler M, Hansen N, van Gunsteren WF. 2011. Current computer modeling cannot explain why two highly similar sequences fold into different structures. Biochemistry. 50: 10965-10973
Allison, JR, Boguslawski K, Fraternali F, van Gunsteren WF. 2011. A refined, efficient mean solvation force model that includes the interior volume contribution. The Journal of Physical Chemistry B. 115: 4547-4557
Allison, JR, Moll G-P, van Gunsteren WF. 2010. Investigation of stability and disulfide bond shuffling of lipid transfer proteins by molecular dynamics simulation. Biochemistry. 49: 6916-6927
Allison, JR, Müller M, van Gunsteren WF. 2010. A comparison of the different helices adopted by α- and β-peptides suggests different reasons for their stability. Protein Science. 19: 2186-2195
Allison, JR, Riniker S, van Gunsteren WF. 2012. Coarse-grained models for the solvents dimethyl sulfoxide, chloroform, and methanol. The Journal of Chemical Physics. 136: 054505-11
Allison, JR, van Gunsteren WF. 2009. A method to explore protein side chain conformational variability using experimental data. ChemPhysChem. 10: 3213-3228
Allison, JR, Varnai P, Dobson CM, Vendruscolo M. 2009. Determination of the free energy landscape of α-synuclein using spin label nuclear magnetic resonance measurements. Journal of the American Chemical Society. 131: 18314-18326
Eichenberger, AP, Allison JR, Dolenc J, Geerke DP, Horta BAC, Meier K, Oostenbrink C, Schmid N, Steiner D, Wang D et al.. 2011. GROMOS++ software for the analysis of biomolecular simulation trajectories. Journal of Chemical Theory and Computation. 7: 3379-3390
Schmid, N, Allison J, Dolenc J, Eichenberger A, Kunz A-P, van Gunsteren W. 2011. Biomolecular structure refinement using the GROMOS simulation software. Journal of Biomolecular NMR. 51: 265-281
Richard, Y, Armstrong DP. 2010. Cost distance modelling of landscape connectivity and gap-crossing ability using radio-tracking data. Journal of Applied Ecology. 47: 603–610
Boulton, RL, Richard Y, Armstrong DP. 2010. The effect of male incubation feeding, food and temperature on the incubation behaviour of New Zealand robins. Ethology. 116: 490–497